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CRYSTAL STRUCTURE OF HUMAN TR BETA LIGAND-BINDING DOMAIN COMPLEXED WITH A POTENT SUBTYPE-SELECTIVE THYROMIMETIC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6.0, temperature 100K
Crystal Properties Matthews coefficient Solvent content 2.21 44.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.918 α = 90 b = 105.315 β = 98.19 c = 55.988 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 22969 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 30 -3 22969 22969 1226 96.66 0.19528 0.19528 0.19195 0.1974 0.25621 0.2587 RANDOM 27.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.35 -0.22 0.03
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.283 r_dihedral_angle_1_deg 6.224 r_scbond_it 4.14 r_mcangle_it 2.879 r_angle_refined_deg 2.178 r_mcbond_it 1.591 r_angle_other_deg 1.084 r_symmetry_vdw_refined 0.341 r_symmetry_hbond_refined 0.316 r_nbd_other 0.254
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.283 r_dihedral_angle_1_deg 6.224 r_scbond_it 4.14 r_mcangle_it 2.879 r_angle_refined_deg 2.178 r_mcbond_it 1.591 r_angle_other_deg 1.084 r_symmetry_vdw_refined 0.341 r_symmetry_hbond_refined 0.316 r_nbd_other 0.254 r_symmetry_vdw_other 0.249 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.136 r_nbtor_other 0.099 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3872 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 54
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement