☰ Navigation Tabs
MYROSINASE FROM SINAPIS ALBA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CBG PDB ENTRY 1CBG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 HANGING DROP METHOD, 12 MG/ML PROTEIN IN 30 MM HEPES, PH 6.5, 0.05 % NAN3 PRECIPITANT 66 % SAT. AMMONIUM SULFATE, 100MM TRIS-HCL, vapor diffusion - hanging drop
Crystal Properties Matthews coefficient Solvent content 3.2 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.3 α = 90 b = 136.4 β = 90 c = 80.3 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH BENT MIRROR, SAGITALLY FOCUSING CRYSTAL 1996-09-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM1A ESRF BM1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 17.4 98.3 0.065 0.065 7.7 4.6 88638 15.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.73 90.7 0.19 0.19 2.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CBG 1.64 17.4 88638 4533 98.3 0.152 0.152 0.1487 0.187 0.1834 RANDOM 16.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 23.8 x_mcangle_it 2.23 x_scangle_it 2.23 x_improper_angle_d 2.2 x_mcbond_it 1.96 x_scbond_it 1.96 x_angle_deg 1.75 x_bond_d 0.022 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 23.8 x_mcangle_it 2.23 x_scangle_it 2.23 x_improper_angle_d 2.2 x_mcbond_it 1.96 x_scbond_it 1.96 x_angle_deg 1.75 x_bond_d 0.022 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4003 Nucleic Acid Atoms Solvent Atoms 672 Heterogen Atoms 339
Software Software Software Name Purpose MOSFLM data reduction ROTAVATA data reduction Agrovata data reduction X-PLOR model building X-PLOR refinement CCP4 data scaling ROTAVATA data scaling X-PLOR phasing