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Structure of topoisomerase subunit
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 298 PEG 3000, Sodium Citrate, Magnesium Chloride, AMP-PNP, pH 5.5, Microbatch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.66 53.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.655 α = 90 b = 219.192 β = 90 c = 106.921 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 98.1 0.111 10 153022 150115 4.1 4.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 88.7 0.413 2.24 13432
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 20 150115 137434 12535 98.1 0.21854 0.21854 0.21447 0.2156 0.26327 0.2584 RANDOM 25.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.55 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.603 r_dihedral_angle_1_deg 4.249 r_scangle_it 3.849 r_scbond_it 2.317 r_angle_refined_deg 1.424 r_mcangle_it 1.397 r_mcbond_it 0.735 r_symmetry_vdw_refined 0.291 r_nbd_refined 0.272 r_symmetry_hbond_refined 0.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.603 r_dihedral_angle_1_deg 4.249 r_scangle_it 3.849 r_scbond_it 2.317 r_angle_refined_deg 1.424 r_mcangle_it 1.397 r_mcbond_it 0.735 r_symmetry_vdw_refined 0.291 r_nbd_refined 0.272 r_symmetry_hbond_refined 0.272 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22053 Nucleic Acid Atoms Solvent Atoms 811 Heterogen Atoms 193
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing REFMAC refinement