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ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOR PDB ENTRY 1MOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6.0
Crystal Properties Matthews coefficient Solvent content 4.3 71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.7 α = 90 b = 143.7 β = 90 c = 173.6 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH CYLINDRICAL MIRROR 1997-02-14 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 30 99.5 0.04 39.2 6.5 95543 -3 18.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.6 96.2 0.208 5.7 3.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER PDB ENTRY 1MOR 1.57 10 94943 99.7 0.185 0.1744 24.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.4 p_staggered_tor 15.2 p_scangle_it 10.4 p_scbond_it 7.8 p_mcangle_it 4.8 p_mcbond_it 3.6 p_planar_tor 2.9 p_chiral_restr 0.14 p_multtor_nbd 0.14 p_singtor_nbd 0.105
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.4 p_staggered_tor 15.2 p_scangle_it 10.4 p_scbond_it 7.8 p_mcangle_it 4.8 p_mcbond_it 3.6 p_planar_tor 2.9 p_chiral_restr 0.14 p_multtor_nbd 0.14 p_singtor_nbd 0.105 p_planar_d 0.032 p_angle_d 0.028 p_plane_restr 0.015 p_bond_d 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2820 Nucleic Acid Atoms Solvent Atoms 416 Heterogen Atoms 62
Software Software Software Name Purpose CCP4 model building PROLSQ refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing