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Crystal Structure Analysis of the cytochrome b5 domain of human sulfite oxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 ammonium sulfate and Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP at 298K
Crystal Properties Matthews coefficient Solvent content 2.53 51.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.899 α = 90 b = 35.447 β = 93.78 c = 26.263 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 4 2001-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.100 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 96 120723 120114 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 49.39 2 27496 26118 1378 96.77 0.1195 0.1195 0.11845 0.13855 RANDOM 11.983
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.23 -0.01 -0.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 9.026 r_dihedral_angle_1_deg 6.504 r_scangle_it 5.647 r_sphericity_bonded 5.493 r_scbond_it 4.069 r_mcangle_it 3.552 r_rigid_bond_restr 2.427 r_mcbond_it 2.426 r_angle_refined_deg 2.186 p_angle_d 2.186
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 9.026 r_dihedral_angle_1_deg 6.504 r_scangle_it 5.647 r_sphericity_bonded 5.493 r_scbond_it 4.069 r_mcangle_it 3.552 r_rigid_bond_restr 2.427 r_mcbond_it 2.426 r_angle_refined_deg 2.186 p_angle_d 2.186 r_angle_other_deg 1.108 r_nbd_refined 0.739 r_xyhbond_nbd_refined 0.342 r_symmetry_vdw_other 0.282 r_nbd_other 0.278 r_symmetry_vdw_refined 0.257 r_symmetry_hbond_refined 0.198 r_chiral_restr 0.15 r_nbtor_other 0.098 r_bond_refined_d 0.023 p_bond_d 0.023 r_gen_planes_other 0.022 r_gen_planes_refined 0.018 r_bond_other_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 617 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 54
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement