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Crystal Structure of the PH-BEACH Domain of Human Neurobeachin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 277 Tris, 10mM DTT, 4% PEG 8000, pH 7.6, VAPOR DIFFUSION, SITTING DROP at 277K
Crystal Properties Matthews coefficient Solvent content 4.77 74.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 179.91 α = 90 b = 179.91 β = 90 c = 98.54 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-06-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.9764, 0.9793, 0.9791, 0.9686 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 99.2 39977 39977 -3 151.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 98.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.9 29.71 39977 39977 1995 99.1 0.23 0.23 0.2268 0.264 0.26 RANDOM 60.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.07 13.59 4.82 -10.89
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.2 c_scangle_it 3.23 c_mcangle_it 2.38 c_scbond_it 2.05 c_mcbond_it 1.36 c_angle_deg 1.3 c_improper_angle_d 0.87 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6654 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MADSYS phasing CNS refinement HKL-2000 data reduction SCALEPACK data scaling