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Horse Liver Alcohol Dehydrogenase Phe93Ala Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD PDB ENTRY 1HLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Dialysis 7 277 MPD, pH 7.0, Dialysis, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.42 49.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.144 α = 91.98 b = 51.308 β = 103.01 c = 93.481 γ = 109.81
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV confocal osmic 2001-07-25 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH 2001-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418 2 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.2 20 0.073 0.073 5.3 2.25 199442
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 84.5 0.29 0.29 1.5 1.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HLD 1.2 20 199422 2017 86.29 0.18772 0.1875 0.1942 0.20881 0.2155 RANDOM 17.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.72 0.18 1.32 0.45 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.118 r_scangle_it 4.551 r_angle_other_deg 3.791 r_scbond_it 3.138 r_mcangle_it 2.454 r_angle_refined_deg 1.843 r_mcbond_it 1.813 r_symmetry_vdw_other 0.265 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.169
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.118 r_scangle_it 4.551 r_angle_other_deg 3.791 r_scbond_it 3.138 r_mcangle_it 2.454 r_angle_refined_deg 1.843 r_mcbond_it 1.813 r_symmetry_vdw_other 0.265 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.169 r_chiral_restr 0.12 r_nbd_other 0.108 r_symmetry_hbond_refined 0.104 r_xyhbond_nbd_refined 0.098 r_bond_refined_d 0.019 r_gen_planes_other 0.013 r_gen_planes_refined 0.01 r_bond_other_d r_dihedral_angle_2_deg r_nbtor_other r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5558 Nucleic Acid Atoms Solvent Atoms 460 Heterogen Atoms 92
Software Software Software Name Purpose d*TREK data scaling d*TREK data reduction AMoRE phasing REFMAC refinement