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STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: WILD TYPE PROTEIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MFW PDB ENTRY 1MFW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 294 CITRATE BUFFER, AMMONIUM SULFATE, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.95 36.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.981 α = 90 b = 29.621 β = 101.33 c = 40.332 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Double crystal focusing mirrors 2002-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9187 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 96.8 0.084 14.1 3.1 15460 15460 -3 13.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 85.7 0.286 2.5 2.1 1368
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MFW 1.504 19.28 1 15460 770 100 0.15472 0.15297 0.1659 0.18694 0.196 RANDOM 15.754
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.1 0.57 -0.91 -0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.984 r_dihedral_angle_1_deg 4.945 r_scangle_it 4.06 r_sphericity_free 2.933 r_scbond_it 2.602 r_mcangle_it 2.224 r_angle_other_deg 2.095 r_sphericity_bonded 1.948 r_angle_refined_deg 1.734 r_rigid_bond_restr 1.577
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.984 r_dihedral_angle_1_deg 4.945 r_scangle_it 4.06 r_sphericity_free 2.933 r_scbond_it 2.602 r_mcangle_it 2.224 r_angle_other_deg 2.095 r_sphericity_bonded 1.948 r_angle_refined_deg 1.734 r_rigid_bond_restr 1.577 r_mcbond_it 1.36 r_symmetry_vdw_other 0.267 r_nbd_refined 0.26 r_symmetry_hbond_refined 0.259 r_nbd_other 0.223 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.18 r_nbtor_other 0.17 r_chiral_restr 0.119 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 829 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement