☰ Navigation Tabs
CRYSTAL STRUCTURE OF HUMAN TGF-BETA TYPE II RECEPTOR LIGAND BINDING DOMAIN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 PEG 2000, sodium citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.17 43.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.471 α = 90 b = 40.658 β = 90 c = 76.154 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-07-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 1.0092, 1.0011, 1.0076 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 36 87.9 0.035 56.5 8.5 45991 43635 -3 8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.09 44.3 0.488 3.9 2277
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.05 35.81 43635 2306 87.96 0.15647 0.15595 0.16615 RANDOM 12.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.16 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.459 r_dihedral_angle_1_deg 5.709 r_scangle_it 3.297 r_scbond_it 2.225 r_mcangle_it 1.668 r_angle_refined_deg 1.478 r_mcbond_it 1.029 r_angle_other_deg 0.686 r_symmetry_vdw_refined 0.339 r_symmetry_hbond_refined 0.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.459 r_dihedral_angle_1_deg 5.709 r_scangle_it 3.297 r_scbond_it 2.225 r_mcangle_it 1.668 r_angle_refined_deg 1.478 r_mcbond_it 1.029 r_angle_other_deg 0.686 r_symmetry_vdw_refined 0.339 r_symmetry_hbond_refined 0.286 r_xyhbond_nbd_refined 0.227 r_nbd_refined 0.224 r_nbd_other 0.208 r_symmetry_vdw_other 0.143 r_chiral_restr 0.085 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 827 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement HKL-2000 data collection HKL-2000 data reduction CNS phasing