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SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NOESY
1mM influenza A virus cRNA promoter (25mer) U-15N, 13C;
20mM phosphate buffer(pH 6.0)0.1mM EDTA
100% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
300
2
2D NOESY
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
3
2D TOCSY
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
4
DQF-COSY
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
5
2D NOESY
20mM NaPi 0.1mM EDTA
6.0
ambient
280
6
2D NOESY
20mM NaPi 0.1mM EDTA
6.0
ambient
280
7
HETCOR
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
8
3D 13C NOESY-HSQC
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
9
3D HCCH-COSY
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
10
3D HCCH-COSY-TOCSY
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
20mM NaPi 0.1mM EDTA
6.0
ambient
280
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DMX
600
2
Bruker
DMX
800
3
Bruker
AMX
500
4
Varian
INOVA
600
NMR Refinement
Method
Details
Software
torsion angle dynamics
The structures are based on a total of 834 restraints, 592 are NOE-derived distance restraints, 140 torsion angle restraints, 54 planarity restraints and 48 base-pair restraints.
Felix
NMR Ensemble Information
Conformer Selection Criteria
structures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
31
Representative Model
21 (lowest energy)
Additional NMR Experimental Information
Details
The structure was determined using 3D heteronuclear nmr spectroscopy.