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Structural Characterisation of the Holliday Junction TCGGTACCGA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 cacodylate, strontium chloride, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.19 43.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.302 α = 90 b = 25.034 β = 110.04 c = 36.778 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.811 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.649 34.503 0.2957 0.082 5.41 6703 18.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.652 1.695 0.332 0.148 4.7 408
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.652 34.503 6621 316 97.64 0.2185 0.2148 0.21486 0.2283 0.29566 0.3183 RANDOM 18.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.67 -0.35 2.32 -0.9
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 4.62 r_sphericity_bonded 3.435 r_scangle_it 3.308 r_angle_refined_deg 2.868 r_scbond_it 2.54 r_angle_other_deg 1.714 r_rigid_bond_restr 1.713 r_symmetry_vdw_other 0.339 r_nbd_other 0.213 r_xyhbond_nbd_refined 0.163
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 4.62 r_sphericity_bonded 3.435 r_scangle_it 3.308 r_angle_refined_deg 2.868 r_scbond_it 2.54 r_angle_other_deg 1.714 r_rigid_bond_restr 1.713 r_symmetry_vdw_other 0.339 r_nbd_other 0.213 r_xyhbond_nbd_refined 0.163 r_nbd_refined 0.147 r_symmetry_hbond_refined 0.123 r_nbtor_other 0.109 r_chiral_restr 0.096 r_symmetry_vdw_refined 0.048 r_gen_planes_refined 0.019 r_bond_refined_d 0.017 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_mcbond_it r_mcangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 404 Solvent Atoms 107 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement SCALA data scaling XTALVIEW refinement MOSFLM data reduction CCP4 data scaling