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Kid toxin protein from E.coli plasmid R1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 290 potassium phosphate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K, pH 5.80
Crystal Properties Matthews coefficient Solvent content 2.05 40.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.264 α = 90 b = 45.457 β = 96.12 c = 65.021 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-04-25 M 3 WAVELENGTH MA
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97965, 0.97979, 0.96863 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 25 93 0.042 0.033 3 5.1 43111 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.39 1.43 87.8 0.11 0.09 3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 12 40455 2195 79.83 0.16126 0.16013 0.1636 0.18187 0.1608 random 9.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.09 -0.06 -0.29
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 18.436 p_singtor_nbd 4.276 p_scangle_it 2.757 p_scbond_it 1.805 p_mcangle_it 1.341 p_angle_d 1.336 p_mcbond_it 0.793 p_xyhbond_nbd 0.308 p_hb_or_metal_coord 0.202 p_xhyhbond_nbd 0.111
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 18.436 p_singtor_nbd 4.276 p_scangle_it 2.757 p_scbond_it 1.805 p_mcangle_it 1.341 p_angle_d 1.336 p_mcbond_it 0.793 p_xyhbond_nbd 0.308 p_hb_or_metal_coord 0.202 p_xhyhbond_nbd 0.111 p_chiral_restr 0.071 p_bond_d 0.009 p_planar_d 0.004 p_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1571 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CCP4 model building REFMAC refinement CCP4 phasing