☰ Navigation Tabs
LYSOZYME PHASED ON ANOMALOUS SIGNAL OF SULFURS AND CHLORINES
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8LYZ PDB ENTRY 8LYZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 BATCH METHOD. 20 MG/ML PROTEIN SOLUTION IN 50MM SODIUM ACETATE PH 4.6 AND 10%
NACL. CRYSTALS GROWN AT ROOM TEMPERATURE.
Crystal Properties Matthews coefficient Solvent content 2.05 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.81 α = 90 b = 78.81 β = 90 c = 36.8 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH SEGMENTED MIRROR 1994-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.92 25 90.1 0.028 0.028 29.1 2 58373 3 17.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.93 0.94 78 0.17 0.17 4.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R PDB ENTRY 8LYZ 1.53 25 17923 915 100 0.22 0.22 0.2135 0.31 0.301 RANDOM 19.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.043 1.043 -1.96
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 20.1 p_staggered_tor 14.9 p_planar_tor 5.7 p_scangle_it 5.1 p_scbond_it 4.3 p_mcangle_it 2.9 p_mcbond_it 2.2 p_multtor_nbd 0.294 p_xyhbond_nbd 0.21 p_chiral_restr 0.18
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 20.1 p_staggered_tor 14.9 p_planar_tor 5.7 p_scangle_it 5.1 p_scbond_it 4.3 p_mcangle_it 2.9 p_mcbond_it 2.2 p_multtor_nbd 0.294 p_xyhbond_nbd 0.21 p_chiral_restr 0.18 p_singtor_nbd 0.168 p_angle_d 0.044 p_planar_d 0.044 p_bond_d 0.026 p_plane_restr 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 9
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CCP4 model building REFMAC refinement CCP4 phasing