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AMYLOIDOGENIC VARIANT (ASP67HIS) OF HUMAN LYSOZYME
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other HUMAN LYSOZYME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 PROTEIN WAS CRYSTALLIZED FROM 0.2 M AMMONIUM SULFATE, 30% PEG 8000, pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.04 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.34 α = 90 b = 31.86 β = 102.56 c = 51.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 288 IMAGE PLATE MARRESEARCH 1995-01-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 90.9 0.103 0.131 8.5 3.7 11071 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 78.3 0.198 0.223 3 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NOT USED AFTER INITIAL STAGES BECAUSE OF LOW NUMBER OF REFLECTIONS HUMAN LYSOZYME COORDINATES FROM ARTYMUIK, P.J.AND BLAKE, C.C.F. J.MOL.BIOL. (1983) 167,693-723. 1.8 8 10216 92.2 0.228 0.228 0.2396 14.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 23.1 x_mcangle_it 2.98 x_mcbond_it 2 x_angle_deg 1.8 x_improper_angle_d 1.7 x_bond_d 0.015 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 23.1 x_mcangle_it 2.98 x_mcbond_it 2 x_angle_deg 1.8 x_improper_angle_d 1.7 x_bond_d 0.015 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1031 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building X-PLOR refinement X-PLOR phasing