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Crystal Structure of the BMP7/ActRII Extracellular Domain Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 296 1M sodium acetate, 0.1M imidazole, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 4.69 73.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.92 α = 90 b = 140.92 β = 90 c = 90.81 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2002-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.03 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 30 96.7 0.055 16.5 8320 8320 -3 145
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42 98.6 0.332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3.3 27.12 8150 8150 410 96.71 0.24 0.24 0.238 0.2671 0.279 0.263 RANDOM 69.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.86 -0.93 -1.86 2.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 24.949 r_scangle_it 5.278 r_dihedral_angle_1_deg 5.088 r_scbond_it 3.124 r_angle_refined_deg 2.978 r_mcangle_it 2.512 r_mcbond_it 1.279 r_symmetry_vdw_refined 0.372 r_symmetry_hbond_refined 0.357 r_nbd_refined 0.342
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 24.949 r_scangle_it 5.278 r_dihedral_angle_1_deg 5.088 r_scbond_it 3.124 r_angle_refined_deg 2.978 r_mcangle_it 2.512 r_mcbond_it 1.279 r_symmetry_vdw_refined 0.372 r_symmetry_hbond_refined 0.357 r_nbd_refined 0.342 r_xyhbond_nbd_refined 0.238 r_chiral_restr 0.162 r_bond_refined_d 0.032 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1595 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 100
Software Software Software Name Purpose HKL-2000 data collection TRUNCATE data reduction MLPHARE phasing REFMAC refinement HKL-2000 data reduction CCP4 data scaling