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STRUCTURE OF THE VARIABLE DOMAIN OF HUMAN IMMUNOGLOBULIN K-4 LIGHT CHAIN LEN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other WAT (MONOMER 2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.5 M AMMONIUM SULFATE, PH 7.0
Crystal Properties Matthews coefficient Solvent content 1.84 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.11 α = 90 b = 83.53 β = 90 c = 54.47 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 DIFFRACTOMETER PICKER 1990-09-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 23.4 99 7471
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT WAT (MONOMER 2) 1.95 10 3 5053 67 0.16 0.15 0.1514 0.27 RANDOM 16.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 24.3 p_transverse_tor 20.6 p_planar_tor 3.1 p_scangle_it 2.51 p_scbond_it 1.58 p_mcangle_it 1.51 p_mcbond_it 0.9 p_multtor_nbd 0.277 p_xyhbond_nbd 0.259 p_singtor_nbd 0.217
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 24.3 p_transverse_tor 20.6 p_planar_tor 3.1 p_scangle_it 2.51 p_scbond_it 1.58 p_mcangle_it 1.51 p_mcbond_it 0.9 p_multtor_nbd 0.277 p_xyhbond_nbd 0.259 p_singtor_nbd 0.217 p_chiral_restr 0.187 p_planar_d 0.051 p_angle_d 0.043 p_bond_d 0.019 p_plane_restr 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 890 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement X-PLOR phasing