X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82935% wt/v PEG 6000, 100 mM TrisCl, pH 8.0, and 1 mM ZnSO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.9758.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.477α = 90
b = 78.477β = 90
c = 97.674γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-04-30MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.20.9791, 0.9611ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.91419.8498.80.0830.08316.1134411344119
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9142.0194.30.3220.3222.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.91419.84134411344166495.320.183250.183250.181240.22275RANDOM23.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.586
r_scangle_it7.727
r_dihedral_angle_1_deg5.851
r_scbond_it4.81
r_mcangle_it2.999
r_angle_refined_deg2.155
r_mcbond_it1.725
r_angle_other_deg0.983
r_symmetry_vdw_refined0.346
r_symmetry_hbond_refined0.334
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.586
r_scangle_it7.727
r_dihedral_angle_1_deg5.851
r_scbond_it4.81
r_mcangle_it2.999
r_angle_refined_deg2.155
r_mcbond_it1.725
r_angle_other_deg0.983
r_symmetry_vdw_refined0.346
r_symmetry_hbond_refined0.334
r_nbd_refined0.263
r_symmetry_vdw_other0.26
r_nbd_other0.211
r_xyhbond_nbd_refined0.156
r_chiral_restr0.138
r_xyhbond_nbd_other0.088
r_bond_refined_d0.025
r_symmetry_hbond_other0.011
r_gen_planes_refined0.01
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms968
Nucleic Acid Atoms
Solvent Atoms122
Heterogen Atoms10

Software

Software
Software NamePurpose
MLPHAREphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling