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ANTICALIN DIGA16 IN COMPLEX WITH DIGITOXIGENIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LKE PDB ENTRY 1LKE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 298 0.1-M hepes, 10% isopropanol, 19% peg 4000, pH 7.80, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.129 α = 90 b = 63.874 β = 91.87 c = 39.329 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate osmic confocal flux 2001-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 37.53 90.8 0.112 11.65 4.31 13430 13430 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 94 0.24 2.62 1.9 1380
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1LKE 1.9 48.8 12712 672 90.82 0.20637 0.20435 0.2119 0.24454 0.2525 RANDOM 30.722
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 -0.01 -2.11 1.82
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.256 r_dihedral_angle_1_deg 7.537 r_mcangle_it 7.033 r_scbond_it 6.414 r_mcbond_it 5.1 r_angle_refined_deg 2.322 r_angle_other_deg 1.057 r_symmetry_hbond_refined 0.281 r_symmetry_vdw_other 0.268 r_xyhbond_nbd_refined 0.265
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.256 r_dihedral_angle_1_deg 7.537 r_mcangle_it 7.033 r_scbond_it 6.414 r_mcbond_it 5.1 r_angle_refined_deg 2.322 r_angle_other_deg 1.057 r_symmetry_hbond_refined 0.281 r_symmetry_vdw_other 0.268 r_xyhbond_nbd_refined 0.265 r_nbd_other 0.253 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.213 r_chiral_restr 0.144 r_nbtor_other 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1268 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing