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BENCE JONES PROTEIN CLE, A LAMBDA III IMMUNOGLOBULIN LIGHT-CHAIN DIMER
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DCL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.8 M AMMONIUM SULFATE PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.17 α = 90 b = 72.54 β = 90 c = 49.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR XUONG-HAMLIN MULTIWIRE 1989-10-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 92 0.047 11373 2
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.65 10 2 8684 71 0.2 0.19 0.1785 0.34 RANDOM 15.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.7 p_staggered_tor 24.6 p_planar_tor 2.3 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.21 p_chiral_restr 0.169 p_planar_d 0.047 p_angle_d 0.039 p_bond_d 0.014
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.7 p_staggered_tor 24.6 p_planar_tor 2.3 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.21 p_chiral_restr 0.169 p_planar_d 0.047 p_angle_d 0.039 p_bond_d 0.014 p_plane_restr 0.013 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3190 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms
Software Software Software Name Purpose LARRY data collection SCALING data reduction X-PLOR model building PROLSQ refinement X-PLOR refinement LARRY data reduction SCALING data scaling X-PLOR phasing