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Crystal structure of Pseudomonas aeruginosa lectin 1 determined by single wavelength anomalous scattering phasing method
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.82 67.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.259 α = 90 b = 72.351 β = 90 c = 133.886 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.3 0.026 61 7.1 31830 31619 16.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 96.3 0.14 0.14 10 4.2 3029
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 1.5 14.6 29435 1535 97.31 0.19262 0.19225 0.2002 0.2285 RANDOM 13.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 -0.19 -0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.971 r_scangle_it 3.352 r_scbond_it 2.169 r_mcangle_it 1.316 r_angle_refined_deg 1.301 r_mcbond_it 0.737 r_angle_other_deg 0.722 r_symmetry_vdw_other 0.327 r_nbd_other 0.252 r_nbd_refined 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.971 r_scangle_it 3.352 r_scbond_it 2.169 r_mcangle_it 1.316 r_angle_refined_deg 1.301 r_mcbond_it 0.737 r_angle_other_deg 0.722 r_symmetry_vdw_other 0.327 r_nbd_other 0.252 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.152 r_symmetry_hbond_refined 0.129 r_xyhbond_nbd_refined 0.092 r_nbtor_other 0.083 r_chiral_restr 0.082 r_metal_ion_refined 0.062 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 897 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling SHELX model building ISAS model building RESOLVE model building CNS refinement SHELX phasing ISAS phasing RESOLVE phasing MAR345 data collection