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Holliday Junction TCGGTACCGA with Na and Ca Binding Sites.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 Sodium Cacodylate, Calcium Chloride, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.14 42.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.067 α = 90 b = 23.775 β = 110.58 c = 73.816 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 1.073 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 15 97.35 0.062 14.25 3 9224 8780 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 2 98.6 0.199 5.45 3 1913
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 15 9180 8780 440 97.35 0.2314 0.23144 0.22821 0.2321 0.29726 0.2983 RANDOM 18.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.32 1.15 -1.64
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 2.641 r_scangle_it 2.52 r_scbond_it 2.027 r_angle_other_deg 1.32 r_nbd_refined 0.348 r_symmetry_hbond_refined 0.23 r_nbd_other 0.22 r_symmetry_vdw_other 0.211 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.133
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 2.641 r_scangle_it 2.52 r_scbond_it 2.027 r_angle_other_deg 1.32 r_nbd_refined 0.348 r_symmetry_hbond_refined 0.23 r_nbd_other 0.22 r_symmetry_vdw_other 0.211 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.133 r_chiral_restr 0.081 r_xyhbond_nbd_other 0.037 r_bond_refined_d 0.015 r_gen_planes_refined 0.015 r_bond_other_d 0.001 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbtor_other r_symmetry_hbond_other r_mcbond_it r_mcangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 808 Solvent Atoms 168 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XTALVIEW refinement MAR345 data collection XDS data scaling