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CRYSTAL STRUCTURE OF PORCINE FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH A NOVEL ALLOSTERIC-SITE INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FPD PDB ID 1FPD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.67 53.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.65 α = 90 b = 165.94 β = 90 c = 79.223 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC YALE MIRRORS 1998-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 97.9 0.044 29.7 8 54052 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 93.9 0.214 7.77 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER THROUGHOUT PDB ID 1FPD 2 30 49955 2681 97.43 0.17918 0.1773 0.1828 0.21445 0.2219 RANDOM 23.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.62 -0.59 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.715 r_scangle_it 5.5 r_dihedral_angle_1_deg 3.964 r_scbond_it 3.535 r_mcangle_it 3.016 r_angle_refined_deg 2.136 r_mcbond_it 1.67 r_angle_other_deg 1.197 r_xyhbond_nbd_other 0.345 r_symmetry_vdw_other 0.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.715 r_scangle_it 5.5 r_dihedral_angle_1_deg 3.964 r_scbond_it 3.535 r_mcangle_it 3.016 r_angle_refined_deg 2.136 r_mcbond_it 1.67 r_angle_other_deg 1.197 r_xyhbond_nbd_other 0.345 r_symmetry_vdw_other 0.234 r_nbd_refined 0.228 r_nbd_other 0.221 r_symmetry_hbond_refined 0.206 r_symmetry_vdw_refined 0.181 r_chiral_restr 0.121 r_xyhbond_nbd_refined 0.118 r_nbtor_other 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4882 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 140
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CCP4 model building REFMAC refinement CCP4 phasing