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Crystal Structure of the Non-phosphorylating glyceraldehyde-3-phosphate Dehydrogenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 sodium formate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 20K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.2 α = 90 b = 185.2 β = 90 c = 132.1 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-04-04 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-01-01 M MAD 3 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-01-01 M MAD 4 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-01-01 M MAD 1,2,3,4 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.8469 EMBL/DESY, HAMBURG BW7B 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9796 EMBL/DESY, HAMBURG BW7A 3 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9792 EMBL/DESY, HAMBURG BW7A 4 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9724 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3,4 2.4 30 99.1 52004 52004
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3,4 2.4 2.5 100
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD 2.4 30 52004 52004 2626 0.208 0.208 0.242 0.2417 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_angle_deg 1.48 x_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3772 Nucleic Acid Atoms Solvent Atoms 386 Heterogen Atoms 49
Software Software Software Name Purpose MAR345 data collection SCALEPACK data scaling SOLVE phasing SHELX model building X-PLOR refinement SHELX phasing