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The His145Ala mutant of 2,3-dihydroxybiphenyl dioxygenase in complex with 2,3-dihydroxybiphenyl
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 7.5 285 Tris/HCl, hexylene glycol, Ammonium Sulfate, pH 7.5, Batch, temperature 285K
Crystal Properties Matthews coefficient Solvent content 3.14 60.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.595 α = 90 b = 121.595 β = 90 c = 109.068 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 1.0 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.13 100 0.097 0.097 6.8 6.3 27803 24136 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.302 0.302 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 84.52 22902 1233 99.94 0.17527 0.17393 0.1889 0.20144 0.2098 RANDOM 17.036
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.28 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.461 r_dihedral_angle_1_deg 3.997 r_scangle_it 3.763 r_scbond_it 2.209 r_angle_refined_deg 1.672 r_mcangle_it 1.624 r_symmetry_hbond_refined 0.964 r_angle_other_deg 0.881 r_mcbond_it 0.869 r_nbd_other 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.461 r_dihedral_angle_1_deg 3.997 r_scangle_it 3.763 r_scbond_it 2.209 r_angle_refined_deg 1.672 r_mcangle_it 1.624 r_symmetry_hbond_refined 0.964 r_angle_other_deg 0.881 r_mcbond_it 0.869 r_nbd_other 0.209 r_symmetry_vdw_other 0.207 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.147 r_symmetry_vdw_refined 0.098 r_xyhbond_nbd_other 0.085 r_chiral_restr 0.083 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbtor_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2224 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 14
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling