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Crystal structure of the His145Ala mutant of 2,3-dihydroxybipheny dioxygenase (BphC)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 7.5 285 Tris/HCl, hexylene glycol, Ammonium Sulfate, pH 7.5, Batch, temperature 285K
Crystal Properties Matthews coefficient Solvent content 3.15 60.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.65 α = 90 b = 121.65 β = 90 c = 109.153 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 1.0 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 38.35 99.8 0.092 0.092 6.6 9.7 27858 27854 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.6 0.254 9.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 84.52 26445 1399 99.72 0.16642 0.16594 0.1798 0.17548 0.1976 RANDOM 13.964
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.762 r_dihedral_angle_1_deg 4.52 r_scangle_it 2.879 r_scbond_it 1.714 r_angle_refined_deg 1.382 r_mcangle_it 1.16 r_angle_other_deg 1.077 r_symmetry_hbond_refined 0.701 r_mcbond_it 0.628 r_xyhbond_nbd_other 0.441
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.762 r_dihedral_angle_1_deg 4.52 r_scangle_it 2.879 r_scbond_it 1.714 r_angle_refined_deg 1.382 r_mcangle_it 1.16 r_angle_other_deg 1.077 r_symmetry_hbond_refined 0.701 r_mcbond_it 0.628 r_xyhbond_nbd_other 0.441 r_nbd_refined 0.205 r_nbd_other 0.198 r_symmetry_vdw_other 0.18 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbtor_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2224 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling