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 1KSB | pdb_00001ksb

Relationship of Solution and Protein-Bound Structures of DNA Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to DNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESYPlatinated 9-mer duplex dissolved in D2O/H2OD2O or (90% H2O, 10% D2O)7.01 atm278
2DQF-COSYPlatinated 9-mer duplex dissolved in D2O/H2OD2O or (90% H2O, 10% D2O)7.01 atm278
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1GEOMEGA600
2VarianUNITYPLUS600
NMR Refinement
MethodDetailsSoftware
AMBERNOE-Restrained refinement (details can be found in the paper)Felix
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Additional NMR Experimental Information
Details2D 1H-31P phase-sensitive Reverse Chemical Shift Correlation (RCSC) and 1H-13C magnitude mode HMQC experiments were performed.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingFelix97.0
2refinementDiscoverBiosym/MSI
3structure solutionInsight II
4data analysisCurves
5refinementIRMABiosym/MSI