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NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS AT 1 A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EE1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microgravity/vapor diffusion 8.5 298 25% PEG 400, 0.05M Tris, 0.05M MgCl2, 0.005M NaAD, 0.0025M ATP, pH 8.5, microgravity/vapor
diffusion at 298K, microgravity/vapor diffusion
Crystal Properties Matthews coefficient Solvent content 1.97 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.28 α = 90 b = 84.79 β = 110.5 c = 59.64 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH 1998-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.9050 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.028 30 96.7 0.048 32.8 3.4 239033 231200 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.028 1.08 72.3 0.381 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FREE R 1EE1 1.03 10 4 216026 179414 10811 83 0.1077 0.1063 0.1063 0.109 0.1354 0.1362 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 18 4272.09 5072.19
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.149 s_non_zero_chiral_vol 0.089 s_zero_chiral_vol 0.083 s_approx_iso_adps 0.068 s_similar_adp_cmpnt 0.039 s_angle_d 0.031 s_from_restr_planes 0.0282 s_bond_d 0.015 s_rigid_bond_adp_cmpnt 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4264 Nucleic Acid Atoms Solvent Atoms 714 Heterogen Atoms 195
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXL-97 refinement