☰ Navigation Tabs
Conserved RNA Structure within the HCV IRES eIF3 Binding Site
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY, DQF-COSY, TOCSY, H-P HETCOR 1.4 mM RNA, 10mM sodium phosphate buffer, 0.1mM EDTA D2O or 90% H2O, 10% D2O 10 mM sodium phosphate 6 ambient 298 2 3D C-edited NOESY, HCCH COSY, HCP, C-edited H-P HETCOR, C-edited TOCSY 0.9 mM U-15N,13C RNA, 10mM sodium phosphate buffer, 0.1mM EDTA D2O or 90% H2O, 10% D2O 10 mM sodium phosphate 6 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DMX 600 2 Bruker DRX 500 3 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing X-PLOR
NMR Ensemble Information Conformer Selection Criteria energy-minimized average of 26 converged conformers with low energy and low restraint violations Conformers Calculated Total Number 26 Conformers Submitted Total Number 1
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR 3.851 Brunger, A.T. 2 refinement X-PLOR 3.851 Brunger, A.T.