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L-aspartate oxidase: R386L mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 isopropanol, Hepes, sodium citrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.49 64.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.278 α = 90 b = 73.278 β = 90 c = 313.933 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2001-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.93 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 96.1 0.107 0.107 4.7 2.3 68503 26873 86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.565 96.4 0.107 0.107 1.2 2.3 2001
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 40 27964 1510 95.63 0.25212 0.24978 0.2457 0.2954 RANDOM 86.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.99 2.99 -5.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.355 r_dihedral_angle_1_deg 5.676 r_scangle_it 4.236 r_scbond_it 2.791 r_angle_refined_deg 2.583 r_mcangle_it 1.512 r_mcbond_it 0.845 r_nbd_refined 0.333 r_symmetry_vdw_refined 0.302 r_symmetry_hbond_refined 0.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.355 r_dihedral_angle_1_deg 5.676 r_scangle_it 4.236 r_scbond_it 2.791 r_angle_refined_deg 2.583 r_mcangle_it 1.512 r_mcbond_it 0.845 r_nbd_refined 0.333 r_symmetry_vdw_refined 0.302 r_symmetry_hbond_refined 0.257 r_xyhbond_nbd_refined 0.233 r_chiral_restr 0.158 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4150 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 55
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling