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CATALYTIC ANTIBODY D2.3 COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YEC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 PEG600, ZnSO4, cacodylate, pH 7.00, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.91 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.275 α = 90 b = 78.275 β = 90 c = 158.952 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 278 IMAGE PLATE MARRESEARCH BENT MIRROR 1998-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 95.5 0.07 12 2.6 43212 43212 26.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.93 97.6 0.0439 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1YEC 1.9 20 43201 2198 95.4 0.213 0.238 RANDOM 33.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 1.35 0.64 -1.28
RMS Deviations Key Refinement Restraint Deviation o_dihedral_angle_d 28.6 o_scangle_it 4.16 o_mcangle_it 2.94 o_scbond_it 2.86 o_mcbond_it 1.79 o_angle_deg 1.7 o_improper_angle_d 1.58 o_bond_d 0.01 o_bond_d_na o_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation o_dihedral_angle_d 28.6 o_scangle_it 4.16 o_mcangle_it 2.94 o_scbond_it 2.86 o_mcbond_it 1.79 o_angle_deg 1.7 o_improper_angle_d 1.58 o_bond_d 0.01 o_bond_d_na o_bond_d_prot o_angle_d o_angle_d_na o_angle_d_prot o_angle_deg_na o_angle_deg_prot o_dihedral_angle_d_na o_dihedral_angle_d_prot o_improper_angle_d_na o_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3389 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 31
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing X-PLOR refinement