1KJ5
Solution Structure of Human beta-defensin 1
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.5 mM HBD1 | 90% H2O/10% D2O | 3.79 | ambient | 298 | ||
2 | 2D TOCSY | 0.5 mM HBD1 | 90% H2O/10% D2O | 3.79 | ambient | 298 | ||
3 | 2D COSY | 0.5 mM HBD1 | 90% H2O/10% D2O | 3.79 | ambient | 298 | ||
4 | 2D NOESY | 0.5 mM HBD1 | 100% D2O | 3.79 | ambient | 298 | ||
5 | 2D TOCSY | 0.5 mM HBD1 | 100% D2O | 3.79 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
---|---|
Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | Bruker |
2 | processing | NMRPipe | 1.8 | Delaglio, G., Grzejiek, S., Vuister, G., Zhu, G., Pfeifer, J., Bax, A. |
3 | data analysis | NMRView | 4.1.3 | Johnson, B.A., Blevins, R.A. |
4 | refinement | CNS | 1.0 | A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros, R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren |
5 | refinement | ARIA | 1.0 | J.Linge, S.O'Donoghue, M.Nilges |