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Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Lu3+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 PEG 8000, potassium thiocyanate, L-proline, glycerol, hexanediol, CHAPS, lutetium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.87 57.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.3 α = 90 b = 119.1 β = 90 c = 158.7 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1999-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.98 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 40 91.4 0.039 0.039 13.6 2.9 42943 42943 -3 -3 54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 82.4 0.254 0.254 2.7 2.6 5587
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 34.5 42943 41361 1306 88 0.22 0.21819 0.21676 0.2117 0.26535 0.2572 RANDOM 30.167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.89 -1.66 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.868 r_scangle_it 5.698 r_scbond_it 3.916 r_dihedral_angle_1_deg 3.289 r_mcangle_it 2.642 r_mcbond_it 1.505 r_angle_refined_deg 1.335 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.868 r_scangle_it 5.698 r_scbond_it 3.916 r_dihedral_angle_1_deg 3.289 r_mcangle_it 2.642 r_mcbond_it 1.505 r_angle_refined_deg 1.335 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.092 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7776 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing