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Crystal Structure of the Guanylate Kinase-like Domain of Human CASK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 sodium formate, potassium chloride, magnesium chloride, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.57 52.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.341 α = 90 b = 70.341 β = 90 c = 74.861 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.31 50 94.2 0.034 20.9 6.7 48853
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.31 1.4 81 0.145 8.31 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.314 12 43926 4927 95.06 0.18818 0.18552 0.1856 0.21244 0.2121 RANDOM 25.768
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 0.24 0.49 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.336 r_dihedral_angle_1_deg 4.238 r_scangle_it 3.559 r_scbond_it 2.197 r_mcangle_it 1.668 r_sphericity_bonded 1.589 r_sphericity_free 1.315 r_angle_refined_deg 1.262 r_rigid_bond_restr 1.104 r_mcbond_it 0.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.336 r_dihedral_angle_1_deg 4.238 r_scangle_it 3.559 r_scbond_it 2.197 r_mcangle_it 1.668 r_sphericity_bonded 1.589 r_sphericity_free 1.315 r_angle_refined_deg 1.262 r_rigid_bond_restr 1.104 r_mcbond_it 0.937 r_xyhbond_nbd_refined 0.369 r_symmetry_vdw_refined 0.271 r_nbd_refined 0.249 r_symmetry_hbond_refined 0.197 r_chiral_restr 0.09 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1466 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling