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STRUCTURE OF NADP-DEPENDENT ALCOHOL DEHYDROGENASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PED PDB ENTRY 1PED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 SEE REFERENCE 1, pH 8.2
Crystal Properties Matthews coefficient Solvent content 2.94 32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.45 α = 90 b = 151.42 β = 90 c = 127.87 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1995-09-22 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 88.2 0.058 18.1 3.33 97572 27.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.09 69.3 0.232 3.19 2.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT SHELLS OF RESOLUTION PDB ENTRY 1PED 2.05 50 97572 1485 88.2 0.205 0.205 0.259 15 SHELLS 31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.72 x_angle_deg 1.802 x_improper_angle_d 1.278 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.72 x_angle_deg 1.802 x_improper_angle_d 1.278 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10560 Nucleic Acid Atoms Solvent Atoms 686 Heterogen Atoms 192
Software Software Software Name Purpose REPLACE model building X-PLOR refinement HKL data reduction HKL data scaling REPLACE phasing