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Ca2+-induced Structural Changes in Calcyclin: High-resolution Solution Structure of Ca2+-bound Calcyclin.
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NOESY
2 mM calcyclin, 50 MM TRIS buffer, 30 mM CaCl2
90% H2O/10% D2O
30 mM CaCl2
7.0
ambient
300
2
3D_13C-separated_NOESY
2 mM 15N, 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2
90% H2O/10% D2O
30 mM CaCl2
7.0
ambient
300
3
3D_15N-separated_NOESY
2 mM 15N, 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2
90% H2O/10% D2O
30 mM CaCl2
7.0
ambient
300
4
3D_HACAHB
2 mM 15N, 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2
90% H2O/10% D2O
30 mM CaCl2
7.0
ambient
300
5
3D_13C-filter,13C-edited_NOESY
1:1 15N,13C-enriched:unlabled calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2
90% H2O/10% D2O
30 mM CaCl2
7.0
ambient
300
6
3D_15N-separated_NOESY
15N-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2
90% H2O/10% D2O
30 mM CaCl2
7.0
ambient
300
7
2D_13C_HSQC
10% 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2
D2O
30 mM CaCl2
7.0
ambient
300
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DMX
750
2
Bruker
DRX
600
3
Bruker
AMX
500
NMR Refinement
Method
Details
Software
distance geometry, restrained
molecular dynamics
The calculations were carried out using a total of 3104 distance and 294 torsion angle constraints. Starting structures were generated as monomers (one chain) with no intersubunit constraints using distance geometry followed by restrained molecular dynamics (rMD). The dimer structures were generated by rMD docking driven by the intersubunit NOEs using two arbitrarily selected starting subunit structures. Each dimer was further refined by rMD with all constraints.
Felix
NMR Ensemble Information
Conformer Selection Criteria
The program Findfam was used to establish that the number of structures required to accurately represent the ensemble was less than 22 (the number selected to represent previous S100A6 ensembles). Structures were ordered by lowest restraint violations, then accepted if total molecular energy and each contributing term was within two standard deviations of the mean. The 22 structures with least restraint violations (energy penalty and magnitude of largest violation) all met these criteria.
Conformers Calculated Total Number
100
Conformers Submitted Total Number
22
Representative Model
1 (closest to the average)
Additional NMR Experimental Information
Details
Dimer constraints were obtained from
the 3D_13C-filter,13C-edited experiment
in combination with 3D_13C-separated_NOESY