1JWD

Ca2+-induced Structural Changes in Calcyclin: High-resolution Solution Structure of Ca2+-bound Calcyclin.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY2 mM calcyclin, 50 MM TRIS buffer, 30 mM CaCl290% H2O/10% D2O30 mM CaCl27.0ambient300
23D_13C-separated_NOESY2 mM 15N, 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl290% H2O/10% D2O30 mM CaCl27.0ambient300
33D_15N-separated_NOESY2 mM 15N, 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl290% H2O/10% D2O30 mM CaCl27.0ambient300
43D_HACAHB2 mM 15N, 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl290% H2O/10% D2O30 mM CaCl27.0ambient300
53D_13C-filter,13C-edited_NOESY1:1 15N,13C-enriched:unlabled calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl290% H2O/10% D2O30 mM CaCl27.0ambient300
63D_15N-separated_NOESY15N-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl290% H2O/10% D2O30 mM CaCl27.0ambient300
72D_13C_HSQC10% 13C-enriched calcyclin, 50 mM TRIS-buffer, 0.05% NaN3, 30 mM CaCl2D2O30 mM CaCl27.0ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX750
2BrukerDRX600
3BrukerAMX500
NMR Refinement
MethodDetailsSoftware
distance geometry, restrained molecular dynamicsThe calculations were carried out using a total of 3104 distance and 294 torsion angle constraints. Starting structures were generated as monomers (one chain) with no intersubunit constraints using distance geometry followed by restrained molecular dynamics (rMD). The dimer structures were generated by rMD docking driven by the intersubunit NOEs using two arbitrarily selected starting subunit structures. Each dimer was further refined by rMD with all constraints.Felix
NMR Ensemble Information
Conformer Selection CriteriaThe program Findfam was used to establish that the number of structures required to accurately represent the ensemble was less than 22 (the number selected to represent previous S100A6 ensembles). Structures were ordered by lowest restraint violations, then accepted if total molecular energy and each contributing term was within two standard deviations of the mean. The 22 structures with least restraint violations (energy penalty and magnitude of largest violation) all met these criteria.
Conformers Calculated Total Number100
Conformers Submitted Total Number22
Representative Model1 (closest to the average)
Additional NMR Experimental Information
DetailsDimer constraints were obtained from the 3D_13C-filter,13C-edited experiment in combination with 3D_13C-separated_NOESY
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisFelix97MSI
2structure solutionDIANA2.8Guntert, Braun & Wuthrich
3refinementAmber4.1Pearlmann, Case, Caldwell, Ross, Cheatham III, Ferguson, Seibel, Singh, Weiner & Kollman
4data analysisFINDFAM1.0Smith, Chazin & Case