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THREE-DIMENSIONAL STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN DIMER ACTING AS A LETHAL AMYLOID PRECURSOR
Crystallization Crystal Properties Matthews coefficient Solvent content 2.5 50.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.28 α = 90 b = 83.32 β = 90 c = 112.591 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2000-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 19.8 98.1 0.04 29.6 4 32131 30.46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.94 2.01 89.1 0.319 3.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.94 19.8 33848 32131 1717 100 0.223 0.22309 0.22137 0.2316 0.25409 0.2586 RANDOM 30.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -0.15 1.01
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 4.43 p_scbond_it 2.894 p_mcangle_it 2.254 p_angle_d 1.942 p_mcbond_it 1.278 p_hb_or_metal_coord 0.246 p_xhyhbond_nbd 0.246 p_xyhbond_nbd 0.2 p_chiral_restr 0.116 p_bond_d 0.02
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 4.43 p_scbond_it 2.894 p_mcangle_it 2.254 p_angle_d 1.942 p_mcbond_it 1.278 p_hb_or_metal_coord 0.246 p_xhyhbond_nbd 0.246 p_xyhbond_nbd 0.2 p_chiral_restr 0.116 p_bond_d 0.02 p_planar_d 0.008 p_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3167 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement