☰ Navigation Tabs
LYSOZYME FROM ECHIDNA MILK (TACHYGLOSSUS ACULEATUS)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LYZ PDB ENTRY 4LYZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.3 pH 6.3
Crystal Properties Matthews coefficient Solvent content 2.05 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.12 α = 90 b = 41.98 β = 91.04 c = 38.09 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU MIRRORS 1994-09-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 90 0.074 0.077 4.3 8418 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 82 0.142 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT (EXCEPT LAST ROUND OF 4 CYCLES) PDB ENTRY 4LYZ 1.9 7 8038 8038 852 90 0.169 0.17 0.168 0.1628 0.229 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23 p_staggered_tor 22 p_scangle_it 4.7 p_planar_tor 3.6 p_scbond_it 3.1 p_mcangle_it 2.1 p_mcbond_it 1.4 p_multtor_nbd 0.25 p_xyhbond_nbd 0.2 p_singtor_nbd 0.19
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23 p_staggered_tor 22 p_scangle_it 4.7 p_planar_tor 3.6 p_scbond_it 3.1 p_mcangle_it 2.1 p_mcbond_it 1.4 p_multtor_nbd 0.25 p_xyhbond_nbd 0.2 p_singtor_nbd 0.19 p_chiral_restr 0.137 p_angle_d 0.042 p_planar_d 0.041 p_bond_d 0.014 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1002 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 1
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building PROLSQ refinement X-PLOR refinement X-PLOR phasing