☰ Navigation Tabs
Crystal Structure Analysis of a Holliday Junction Formed by CCGGTACCGG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 290 40 mM sodium cacodylate (pH 7.0), 12 mM spermine, 80 mM KCl, 10% (v/v) MPD equilibrated against 35% MPD with oligo concentration of 1 mM, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 290.0K
Crystal Properties Matthews coefficient Solvent content 3.24 62.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.871 α = 90 b = 25.364 β = 110.57 c = 37.373 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2001-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1.073 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 30 96.3 0.064 4339 2387 4 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.43 97.3 0.267
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.35 34.92 2286 104 96.41 0.22841 0.22639 0.249 0.26779 0.2963 RANDOM 41.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.92 -0.01 3.32 -0.41
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 426
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 2.195 r_angle_other_deg 1.463 r_xyhbond_nbd_refined 0.523 r_chiral_restr 0.518 r_nbd_other 0.329 r_nbd_refined 0.268 r_symmetry_vdw_other 0.213 r_symmetry_hbond_refined 0.204 r_nbtor_other 0.157 r_symmetry_vdw_refined 0.155
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 2.195 r_angle_other_deg 1.463 r_xyhbond_nbd_refined 0.523 r_chiral_restr 0.518 r_nbd_other 0.329 r_nbd_refined 0.268 r_symmetry_vdw_other 0.213 r_symmetry_hbond_refined 0.204 r_nbtor_other 0.157 r_symmetry_vdw_refined 0.155 r_bond_refined_d 0.067 r_gen_planes_refined 0.033 r_xyhbond_nbd_other 0.025 r_bond_other_d 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_gen_planes_other r_symmetry_hbond_other r_mcbond_it r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 404 Solvent Atoms 43 Heterogen Atoms
Software Software Software Name Purpose XFIT data reduction REFMAC refinement DENZO data reduction SCALEPACK data scaling