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Pyruvate dehydrogenase kinase, isozyme 2, containing ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 PEG 6k, Imidazole, ADP, Magnesium Chloride, Iodo-propionic Acid, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.421 α = 90 b = 109.874 β = 104.52 c = 71.414 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS II 1999-04-01 M SINGLE WAVELENGTH 2 1 x-ray CCD CUSTOM-MADE 1998-03-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 2 SYNCHROTRON NSLS BEAMLINE X12C 0.9803, 0.9802, 0.9300 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.4 20 88.3 0.042 23.1 3.3 36213 35685 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO FREE R 2.5 6 28853 28853 1508 84.2 0.1905 0.208 0.202 0.1867 0.2619 0.2394 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 5677
RMS Deviations Key Refinement Restraint Deviation s_similar_dist 0.316 s_anti_bump_dis_restr 0.139 s_zero_chiral_vol 0.104 s_non_zero_chiral_vol 0.076 s_similar_adp_cmpnt 0.044 s_angle_d 0.033 s_bond_d 0.019 s_from_restr_planes 0.019 s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5393 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 56
Software Software Software Name Purpose SOLVE phasing SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling