☰ Navigation Tabs
OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KEK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OLB PDB ENTRY 2OLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.56 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.41 α = 90 b = 76.41 β = 90 c = 71.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 10 97.8 0.044 9 3.4 167630 12.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION PDB ENTRY 2OLB 1.25 10 164131 8409 97.8 0.224 0.252 16.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 28.2 p_staggered_tor 15.7 p_scangle_it 5.181 p_scbond_it 3.575 p_planar_tor 2.3 p_mcangle_it 1.987 p_mcbond_it 1.238 p_multtor_nbd 0.244 p_singtor_nbd 0.17 p_xyhbond_nbd 0.161
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 28.2 p_staggered_tor 15.7 p_scangle_it 5.181 p_scbond_it 3.575 p_planar_tor 2.3 p_mcangle_it 1.987 p_mcbond_it 1.238 p_multtor_nbd 0.244 p_singtor_nbd 0.17 p_xyhbond_nbd 0.161 p_chiral_restr 0.095 p_planar_d 0.023 p_angle_d 0.02 p_bond_d 0.009 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4193 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 18
Software Software Software Name Purpose DENZO data reduction CCP4 model building PROLSQ refinement CCP4 phasing