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Crystal structure of Metal-dependent hydrolase of cytosinedemaniase/chlorohydrolase family (TM0936) from Thermotoga maritima at 1.9 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.5 293 10 % PEG 8000, 0.2 M NaCl, 0.1 M CHES pH 9.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K, pH 9.50
Crystal Properties Matthews coefficient Solvent content 3.16 61.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.782 α = 90 b = 113.782 β = 90 c = 81.305 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2002-04-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.978932, 0.979224, 0.918370 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 46.613 99.2 0.082 13.3 3.8 47228 31.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.31 99.7 0.356 3.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 46.61 47228 2359 98.1 0.175 0.175 0.1806 0.202 0.173 RANDOM 24.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.756 1.16 2.774 -5.53
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 6.953 c_scbond_it 5.704 c_mcangle_it 4.215 c_mcbond_it 3.749 c_angle_deg 1.79 c_bond_d 0.016 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 6.953 c_scbond_it 5.704 c_mcangle_it 4.215 c_mcbond_it 3.749 c_angle_deg 1.79 c_bond_d 0.016 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3235 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 1
Software Software Software Name Purpose Blu-Ice data collection MOSFLM data reduction SCALA data scaling CCP4 data reduction SnB phasing MLPHARE phasing CCP4 model building SOLVE phasing CNS refinement CCP4 data scaling RESOLVE phasing