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Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 293 50% (v/v) PEG-200, 0.1M Tris pH 7.0, pH 6.8, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K, pH 6.80
Crystal Properties Matthews coefficient Solvent content 2.81 55.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.413 α = 115.73 b = 79.962 β = 97.57 c = 89.43 γ = 110.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2002-05-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9184, 0.9794, 0.9792 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 76.7 96.4 0.075 5.2 4.1 38502 19.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.85 2.95 96.1 0.232 2.2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.85 24.99 36521 1938 96.6 0.234 0.274 0.2795 RANDOM 31.307
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.71 -0.4 -0.34 0.01 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.291 r_dihedral_angle_1_deg 4.139 r_mcangle_it 2.291 r_scangle_it 1.823 r_angle_refined_deg 1.676 r_mcbond_it 1.285 r_scbond_it 1.069 r_angle_other_deg 0.937 r_symmetry_vdw_refined 0.511 r_symmetry_hbond_refined 0.496
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.291 r_dihedral_angle_1_deg 4.139 r_mcangle_it 2.291 r_scangle_it 1.823 r_angle_refined_deg 1.676 r_mcbond_it 1.285 r_scbond_it 1.069 r_angle_other_deg 0.937 r_symmetry_vdw_refined 0.511 r_symmetry_hbond_refined 0.496 r_symmetry_vdw_other 0.474 r_symmetry_hbond_other 0.395 r_nbd_refined 0.271 r_nbd_other 0.248 r_xyhbond_nbd_refined 0.231 r_xyhbond_nbd_other 0.148 r_chiral_restr 0.095 r_nbtor_other 0.03 r_bond_refined_d 0.02 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11068 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling CCP4 data reduction CCP4 model building SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling CCP4 phasing RESOLVE phasing