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Crystal structure of aspartate dehydrogenase (TM1643) from Thermotoga maritima at 1.9 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 293 20% PEG 8000, 0.05M KH2PO4, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 45.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.2 α = 90 b = 63.2 β = 90 c = 126.2 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2002-04-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.93218, 0.979181, 0.978932 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44.717 98.5 0.058 15.6 6.5 23895 28.93
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 88.6 0.758 1.4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 44.69 20858 20858 2087 99.8 0.224 0.224 0.2206 0.26 0.2561 RANDOM 34.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.316 -3.316 6.632
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 6.231 c_scbond_it 4.392 c_mcangle_it 4.103 c_mcbond_it 3.112 c_angle_deg 1.41 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 6.231 c_scbond_it 4.392 c_mcangle_it 4.103 c_mcbond_it 3.112 c_angle_deg 1.41 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1838 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 44
Software Software Software Name Purpose DENZO data reduction SCALA data scaling CCP4 data reduction SOLVE phasing RESOLVE model building CNS refinement CCP4 data scaling RESOLVE phasing