1J5H

Solution Structure of Apo-Neocarzinostatin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-1H-15N TOCSY2.2 mM u-15N 1, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v90% H2O/10% D2O25 mM sodium phosphate5.0ambient308
23D 1H-1H-15N NOESY2.2 mM u-15N 1, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v90% H2O/10% D2O25 mM sodium phosphate5.0ambient308
33D HNHA2.2 mM u-15N 1, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v90% H2O/10% D2O25 mM sodium phosphate5.0ambient308
43D HNHB2.2 mM u-15N 1, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v90% H2O/10% D2O25 mM sodium phosphate5.0ambient308
52D 1H-15N HSQC2.2 mM u-15N 1, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v90% H2O/10% D2O25 mM sodium phosphate5.0ambient308
62D 1H-1H NOESY2.2 mM u-15N 1, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v90% H2O/10% D2O25 mM sodium phosphate5.0ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianUNITYPLUS500
NMR Refinement
MethodDetailsSoftware
Simulated annealing with torsion angle dynamicsRESTRAINTS FOR STRUCTURE CALCULATION: INTRARESIDUE NOES 194, SEQUENTIAL NOES (I, I +1) 206, MEDIUM-RANGE NOES (I, I+2 - I+4) 129, LONG-RANGE NOES (I, I> 5) 303, PSI ANGLE RESTRAINTS 56, HYDROGEN BONDS 52, DISULPHIDE BONDS 12.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy
Conformers Calculated Total Number100
Conformers Submitted Total Number44
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1cVarian
2processingNMRPipesgi6xDelaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A.
3analysisXEASY1.3.13Bartels, C., Xia, T. H., Billeter, M., Guntert, P., and Wurthrich, K.
4refinementDYANAGuntert, Mumenthaler, Wurthrich