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Crystal structure of Urate oxidase from Bacillus SP. TB-90 co-crystallized with 8-Azaxanthine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 PEG 8000, lithium sulfate, Tris-HCl, 8-azaxanthine, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 52.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.39 α = 90 b = 144.41 β = 90 c = 78.785 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.900 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.01 97 0.066 7.9 6 75717 75560 3 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.257 90 0.066 0.189 2.1 5.3 10109
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 48.01 75717 71917 3800 97.16 0.219 0.18232 0.18042 0.1909 0.21806 0.2255 RANDOM 19.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.1 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.651 r_scangle_it 3.758 r_mcangle_it 3.588 r_angle_other_deg 3.193 r_scbond_it 2.367 r_mcbond_it 2.281 r_angle_refined_deg 1.503 r_symmetry_vdw_other 0.295 r_nbd_other 0.284 r_symmetry_vdw_refined 0.265
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.651 r_scangle_it 3.758 r_mcangle_it 3.588 r_angle_other_deg 3.193 r_scbond_it 2.367 r_mcbond_it 2.281 r_angle_refined_deg 1.503 r_symmetry_vdw_other 0.295 r_nbd_other 0.284 r_symmetry_vdw_refined 0.265 r_symmetry_hbond_refined 0.258 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.212 r_nbtor_other 0.102 r_chiral_restr 0.087 r_bond_refined_d 0.019 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9892 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 64
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling