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Crystal structure of human gamma1-adaptin ear domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 PEG4000, magnesium chloride, HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.21 44.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.132 α = 90 b = 62.132 β = 90 c = 147.869 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 100 CCD OXFORD PX210 2001-09-18 2 1 100 CCD OXFORD PX210 2001-09-18 3 1 x-ray 100 CCD ADSC QUANTUM 4 2001-12-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.900 SPring-8 BL44XU 2 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.900 SPring-8 BL44XU 3 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.96, 0.9778, 0.9785 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 3 1.8 57 99.2 27518 27518
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.89 99.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 20 26023 1363 98.86 0.22756 0.22649 0.2278 0.24764 0.2482 RANDOM 24.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.209 r_dihedral_angle_1_deg 4.123 r_scangle_it 4.088 r_scbond_it 2.324 r_mcangle_it 1.61 r_angle_refined_deg 1.331 r_mcbond_it 0.836 r_symmetry_vdw_refined 0.218 r_symmetry_hbond_refined 0.216 r_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.209 r_dihedral_angle_1_deg 4.123 r_scangle_it 4.088 r_scbond_it 2.324 r_mcangle_it 1.61 r_angle_refined_deg 1.331 r_mcbond_it 0.836 r_symmetry_vdw_refined 0.218 r_symmetry_hbond_refined 0.216 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.087 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1898 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms
Software Software Software Name Purpose MLPHARE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling