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THE NMR SOLUTION STRUCTURE OF THE COMPLEX FORMED BETWEEN ALPHA-BUNGAROTOXIN AND AN 18MER COGNATE PEPTIDE
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D_15N-separated_TOCSY
2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide
95% H2O/5% D2O
4.0
ambient
308
2
3D HNHA
2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide
95% H2O/5% D2O
4.0
ambient
308
3
3D_15N-separated_NOESY
2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide
95% H2O/5% D2O
4.0
ambient
308
4
2D_TOCSY
2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide
95% H2O/5% D2O
4.0
ambient
308
5
2D_NOESY
2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide
95% H2O/5% D2O
4.0
ambient
308
6
2D 1H-15N HSQC
2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide
95% H2O/5% D2O
4.0
ambient
308
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
600
NMR Refinement
Method
Details
Software
distance geometry and simulated annealing
XwinNMR
NMR Ensemble Information
Conformer Selection Criteria
The submitted conformer models are the 20 structures with the lowest energy from 120 acceptable structures which were from 300 total calculated structures and had no restraint violations. The best representative conformer is the lowest potential energy structure of the ensemble.
Conformers Calculated Total Number
300
Conformers Submitted Total Number
20
Representative Model
8 (it is the lowest potential energy structure of the ensemble)
Additional NMR Experimental Information
Details
The authors recommend using the Graphics program, MOLMOL, to view this ensemble of 20 structures.