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CRYSTAL STRUCTURE OF BOVINE THROMBIN COMPLEX WITH PROTEASE INHIBITOR ECOTIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UVT pdb entry 1uvt replaces the trypsin domain from the pdb entry 1ezs experimental model PDB 1EZS pdb entry 1uvt replaces the trypsin domain from the pdb entry 1ezs
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 PEG6K, Citric Acid, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.97 58.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.517 α = 90 b = 165.377 β = 90 c = 83.326 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 4 1999-09-20 M SINGLE WAVELENGTH 2 1 200 OSCILLATION CAMERA MACSCIENCE 2000-01-10
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.98 SSRL BL9-1 2 SYNCHROTRON ALS BEAMLINE 5.0.2 1.10 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 6 93.2 0.108 13.3 19908 18555 2 2 29.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 88.7 0.298 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1uvt replaces the trypsin domain from
the pdb entry 1ezs 2.5 6 2 2 19908 19342 1887 97.1 0.203 0.203 0.218 0.264 0.2566 RANDOM 46.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.64 -10.72 13.36
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.6 c_scangle_it 8.42 c_mcangle_it 8.02 c_scbond_it 5.77 c_mcbond_it 4.98 c_angle_deg 1.3 c_improper_angle_d 0.79 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.6 c_scangle_it 8.42 c_mcangle_it 8.02 c_scbond_it 5.77 c_mcbond_it 4.98 c_angle_deg 1.3 c_improper_angle_d 0.79 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3363 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 9
Software Software Software Name Purpose MAR345 data collection SCALEPACK data scaling X-PLOR model building CNS refinement X-PLOR phasing