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CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 2 M ammonium sulfate, 0.1 M sodium acetate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.1 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.84 α = 90 b = 171.84 β = 90 c = 144.568 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD ADSC QUANTUM 4 1999-09-21 M SINGLE WAVELENGTH 2 1 x-ray 173 CCD ADSC QUANTUM 4 2000-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.979 NSLS X8C 2 SYNCHROTRON NSLS BEAMLINE X12B 0.978 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 28 99 0.079 19.3 6.8 72520 72520 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 96 0.294 3.6 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1mlc 2.1 27.66 72520 72520 7190 98.8 0.229 0.2203 0.2203 0.2257 0.2583 0.2631 RANDOM 38.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.79 1.06 3.79 -7.57
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.37438 c_scangle_it 2.93 c_scbond_it 2.09 c_mcangle_it 2.05 c_angle_deg 1.62386 c_mcbond_it 1.33 c_improper_angle_d 0.99896 c_bond_d 0.011155
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6414 Nucleic Acid Atoms 121 Solvent Atoms 339 Heterogen Atoms 5
Software Software Software Name Purpose SCALEPACK data scaling AMoRE phasing X-PLOR model building CNS refinement X-PLOR phasing