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CRYSTAL STRUCTURE OF L1 RIBOSOMAL PROTEIN FROM METHANOCOCCUS JANNASCHII WITH 1.85A RESOLUTION.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CJS PDB ENTRY 1CJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 301.5 PEG 10000, HEPES-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 301.5K
Crystal Properties Matthews coefficient Solvent content 3.02 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.577 α = 83.32 b = 38.881 β = 80.14 c = 54.936 γ = 74.72
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.009 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.825 20 94.8 0.088 15 3.52 188639 23155 23.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.825 2 87.1 0.309 3.41
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CJS 1.85 19.83 23405 22327 1078 99.5 0.222 0.222 0.222 0.2223 0.247 0.2467 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 1.85 -0.83 2.27 0.48 -3.45
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22 c_scangle_it 8.51 c_scbond_it 5.76 c_mcangle_it 4.86 c_mcbond_it 3.21 c_angle_deg 1.4 c_improper_angle_d 0.85 c_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1682 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 6
Software Software Software Name Purpose XDS data scaling XDS data reduction CNS refinement CNS phasing